Publications

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If you have used ATB in a publication and would like to add it to this list, please contact us at contact@allthebacteria.org

The following publications use AllTheBacteria:

Host interactions of bioactive molecules produced by Klebsiella spp.
Anne L. McCartney, Lesley Hoyles, Microbiota and Host, 2025
BWT construction and search at the terabase scale
Heng Li, Bioinformatics, 2025
MUSET: set of utilities for constructing abundance unitig matrices from sequencing data
Riccardo Vicedomini, Francesco Andreace, Yoann Dufresne , Rayan Chikhi, Camila Duitama González, Bioinformatics, 2025
Global dissemination of npmA-mediated pan-aminoglycoside resistance via a mobile genetic element in Gram-positive bacteria
Carlos Serna et al, Nature Communications, 2025
AllTheBacteria – all bacterial genomes assembled, available, and searchable
Martin Hunt, Leandro Lima, Daniel Anderson, George Bouras, Michael Hall, Jane Hawkey, Oliver Schwengers, Wei Shen, John A. Lees, Zamin Iqbal; bioRxiv, 2025